The best way to install FSLeyes from PyPi is to create an isolated python environment with a virtual environment, and install FSLeyes into it. This is an advanced option, recommended only if you are comfortable working with Python environments, and installing packages using your OS package manager.įSLeyes is available on PyPi and should work with Python 3.6 and newer. Or you can create a separate conda environment, specifically for FSLeyes, like so:Ĭonda create -c conda-forge -p path/to/fsleyes/environment fsleyes $FSLDIR/fslpython/bin/conda update -n fslpython -c conda-forge -update-all fsleyesįSLeyes is available on conda-forge - if you use an anaconda or miniconda environment, you can install FSLeyes into it like so: When you want to update FSLeyes again in the future, use this command instead: $FSLDIR/fslpython/bin/conda install -n fslpython -c conda-forge -update-all fsleyes Now you can install FSLeyes with the following command: Before updating, you should remove the old standalone version of FSLeyes. Versions of FSL prior to 6.0.2 come with a standalone version of FSLeyes. On macOS, if you experience segmentation faults after updating FSLeyes, try running: $FSLDIR/fslpython/bin/conda install -n fslpython -c conda-forge libffi=3.3
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